miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|159646701|gb|EG403068.1|EG403068 TCCTGCCACGCTTCCCACGCGTCCCTCCTACTCCTCTCCCCTAACCCCGCCGCCGCCGCGCGTCTCCGCGTCGGTGGCCT
CCGAGTCAGGCGGCCCCGCCGCCTCCGCCTCCCCGTACGCACAGCCGCGGGAGGCAGCCCACTCGACGCCGAGATCCCCG
ACCCTACAGTCGACGACGACGAGTGGGGCCGCGAGCCGCCCGCTTCCGCGTCGGGTAACTCGCGCCCCGTCGTCGCCGAC
GAGTGGGGCGAGCCGGGGGTGCCCGAGCCCGAGCAGCCCTCCGGCGCCGACACCCCTACCAACGACGACGAGTGGGGTGG
GGAGCCCACGCCGACGCCGCCCAAGGCGGAGGAGGCTCCGGTTACGAAGGAGGACGAGGGGCGGGAGGAGCTGAAGCGGT
GCTTGGTGGACACGGTGTACGGCTCCGCCCTCGGCCTCAAGGCTTCCTCGGAGGTCAGGGGGGAGGTCGTGGAGCTCGTG
GCCCAGCTCGAGGCTGCCAATCCCACGTCCGCGCCCGTCCAGGCGCCAGAGCTCGACGAAAACTGGATCCTCCTGTATAC
GGCATATTCTGAGCTTCTACCGATTCTGCTGGCTGGGGCAACACCATTGGGCAGAGTTGATAAGATATCCCAAGAAATCG
ACTCGAGAAGCATGACAATAATCAATGCTTCAACTATT




Most similar to sp|Q7XBW5|PAP3_ORYSJ

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|Q7XBW5|PAP3_ORYSJ Probable plastid-lipid-associated protein 3,
           chloroplastic OS=Oryza sativa subsp. japonica GN=PAP3
           PE=3 SV=1
          Length = 374

 Score =  236 bits (603), Expect = 8e-62
 Identities = 123/176 (69%), Positives = 134/176 (76%), Gaps = 2/176 (1%)
 Frame = +1

Query: 157 PDPTVDDDEWGREPPASASGNSRPV-VADEWGEPGVPEPEQPSGADTPTNDDEWGGXXXX 333
           PDP +DDDEWGR+ P SASGNSRPV V DEWGEPGVPEP+  S AD PTNDDEWGG    
Sbjct: 71  PDPPIDDDEWGRDDP-SASGNSRPVLVTDEWGEPGVPEPQSTSAADPPTNDDEWGGDPAP 129

Query: 334 XXXXXXXXXVTKEDEGREELKRCLVDTVYGSALGLKASSEVRGEVVELVAQLEAANPTSA 513
                       E+E REELKRCLVDTVYGS LG +ASSEVRGEV+ELV QLEA NPT  
Sbjct: 130 PPPPPPVPEEDNEEERREELKRCLVDTVYGSDLGFRASSEVRGEVLELVTQLEATNPTPE 189

Query: 514 PVQAPE-LDENWILLYTAYSELLPILLAGATPLGRVDKISQEIDSRSMTIINASTI 678
           PVQA   L  NWIL+YTAYSELLPIL  GA PL +VD+ISQEID+ SMTI+NASTI
Sbjct: 190 PVQATHLLAGNWILIYTAYSELLPILAVGAAPLFKVDEISQEIDTNSMTIVNASTI 245